GgaEX1024824 @ galGal4
Exon Skipping
Gene
ENSGALG00000000864 | FBXW2
Description
F-box/WD repeat-containing protein 2 [Source:RefSeq peptide;Acc:NP_001007843]
Coordinates
chr17:10375429-10381244:-
Coord C1 exon
chr17:10381050-10381244
Coord A exon
chr17:10380193-10380326
Coord C2 exon
chr17:10375429-10377329
Length
134 bp
Sequences
Splice sites
3' ss Seq
AGAATGCTCTTTGCTTGTAGTTT
3' ss Score
4.46
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
GATCAGATGACTTGTCTGCAAAACTGTGGGATGTAAGCACAGGTCAGTGCATCTATGGTATCCAGACACACACTTGTGCTACAGTGAAGTTTGATGAACAAAAACTTGTAACGGGCTCTTTTGATAACACAGTAGCCTGTTGGGAATGGAGCTCTGGGGCAAAGACACAGCATTTCAGAGGACACACTGGTGCAG
Seq A exon
TTTTTAGTGTGGACTACAATGATGAACTTGATGTTCTAGTCAGTGGCTCTGCAGACTTCACTGTGAAAGTGTGGGCCTTATCAACAGGAACGTGCCTGAATACCCTTACTGGACACACAGAATGGGTCACTAAG
Seq C2 exon
GGTTATCAAGACTTCTGACTTCTCAAATGTGTCCTTGCTAGGCTTTGGAGAGATATTTGCTCTACTGTTTGATAATAGATACCTGTATATAATGGACGTGAGGACAGAAGAACTGATAAGCCGCTGGCCTCTACCAGAGTATAGAAAATCAAAGAGAGGGTCAAGTTTTTTGGCTGGTGAAATGTCTTGGTTAAATGGACTAAATGGTCAAAACGATACAGGCTTGGTTTTTGCCACCAGTATGCCAGACCACAGTATCCATTTGGTGTTATGGAAAGAACATGGCTGAAAAGATTACATATGCAGAATCTTCAGGATTATATGGACTATCAGCAATGTGTCCATCAAATGAAACTTTGCATGAACCAAAGTTGCACATCTAATGGTATCATCATGCAATGCACAATCACTTGATTTTATTTCGGCATTTGGGAACGGATTGGTTTTGACATAATACAACAGAGCATGCTAATAGTATTCACCATTAAATTTCTCTTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000864_MULTIEX1-1/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(28.6=15.2),PF0040027=WD40=WD(100=53.0),PF0040027=WD40=PU(33.3=19.7)
A:
PF0040027=WD40=PD(64.1=55.6)
C2:
NO
Main Skipping Isoform:
ENSGALT00000001266fB7585
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGCCTGTTGGGAATGGAGC
R:
ACCAAGACATTTCACCAGCCA
Band lengths:
255-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]