HsaEX0025368 @ hg38
Exon Skipping
Gene
ENSG00000119402 | FBXW2
Description
F-box and WD repeat domain containing 2 [Source:HGNC Symbol;Acc:HGNC:13608]
Coordinates
chr9:120772754-120777031:-
Coord C1 exon
chr9:120776931-120777031
Coord A exon
chr9:120776093-120776226
Coord C2 exon
chr9:120772754-120772840
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGTGTAATTATATGCACTAGTAT
3' ss Score
1.51
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CATCCTTTAGGGCCCATCTCCAATATCGCCTCTTCCCTGAAGTCCTCCCTGATACCCCTGGGCAGAGTTAGTCATTCTCCTTGATGTTTCCCTAGCAAGAG
Seq A exon
TATTTAGCGTGGACTACAATGATGAACTGGATATCTTGGTGAGCGGCTCTGCAGACTTCACTGTGAAAGTATGGGCTTTATCTGCTGGGACATGCCTGAACACACTCACCGGGCACACGGAATGGGTCACCAAG
Seq C2 exon
GTAGTTTTGCAGAAGTGCAAAGTCAAGTCTCTCTTGCACAGTCCTGGAGACTACATCCTCTTAAGTGCAGACAAATATGAGATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119402-'12-10,'12-9,13-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0040027=WD40=PD(64.1=55.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTTAGGGCCCATCTCCAA
R:
TCATATTTGTCTGCACTTAAGAGGA
Band lengths:
179-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development