MmuEX0018947 @ mm9
Exon Skipping
Gene
ENSMUSG00000035949 | Fbxw2
Description
F-box and WD-40 domain protein 2 [Source:MGI Symbol;Acc:MGI:1353435]
Coordinates
chr2:34664034-34668529:-
Coord C1 exon
chr2:34668335-34668529
Coord A exon
chr2:34666503-34666636
Coord C2 exon
chr2:34664034-34664120
Length
134 bp
Sequences
Splice sites
3' ss Seq
CTTTATGTTGTATGCACTAGTGT
3' ss Score
4.88
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GGTCAGATGACTTGTCTGCAAAGCTGTGGGATGTAAGCACAGGGCAGTGTGTTTACGGCATCCAGACCCACACTTGTGCAGCTGTGAAGTTCGATGAACAGAAGCTTGTGACAGGCTCCTTTGACAACACTGTGGCCTGCTGGGAGTGGAGTTCCGGAGCCAGGACCCAGCACTTCCGGGGGCACACGGGGGCGG
Seq A exon
TGTTCAGTGTGGACTACAGTGATGAACTGGATATTTTGGTGAGTGGCTCTGCGGACTTCGCTGTGAAAGTATGGGCTTTATCTGCTGGGACATGCCTGAATACACTCACTGGGCATACTGAATGGGTCACCAAG
Seq C2 exon
GTGGTTTTGCAGAAGTGCAAAGTCAAGTCTCTCTTGCACAGCCCTGGAGACTACATCCTCTTAAGTGCAGACAAATATGAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035949-'8-16,'8-14,13-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(28.6=15.2),PF0040027=WD40=WD(100=53.0),PF0040027=WD40=PU(33.3=19.7)
A:
PF0040027=WD40=PD(64.1=55.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTCTGCAAAGCTGTGGGA
R:
GGATGTAGTCTCCAGGGCTGT
Band lengths:
243-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: