RnoEX0035460 @ rn6
Exon Skipping
Gene
ENSRNOG00000018687 | Fbxw2
Description
F-box and WD repeat domain containing 2 [Source:RGD Symbol;Acc:1310460]
Coordinates
chr3:13877344-13881559:-
Coord C1 exon
chr3:13881365-13881559
Coord A exon
chr3:13879426-13879559
Coord C2 exon
chr3:13877344-13877430
Length
134 bp
Sequences
Splice sites
3' ss Seq
GATTGTGTTGTGTGCACTAGTGT
3' ss Score
5.43
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GGTCAGATGATTTGTCTGCAAAGCTGTGGGATGTAAGCACAGGGCAGTGTGTTTACGGCATCCAGACCCACACTTGTGCAGCCGTGAAGTTCGATGAACAGAAGCTTGTGACAGGCTCCTTTGACAACACTGTGGCCTGCTGGGAATGGAGTTCCGGAGCCAGGACCCAGCACTTCCGGGGGCACACAGGGGCGG
Seq A exon
TGTTCAGTGTGGACTACAGTGATGAACTGGATATTTTGGTGAGTGGCTCTGCGGACTTCGCTGTGAAAGTATGGGCTTTATCTGCTGGGACATGCCTGAACACACTCACTGGGCACACAGAATGGGTCACCAAG
Seq C2 exon
GTGGTTCTGCAGCAGTGCAAAGTCAAGTCTCTCTTGCACAGCCCTGGGGACTACATCCTTTTAAGTGCAGACAAGTACGAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018687-'9-17,'9-15,12-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(28.6=15.2),PF0040027=WD40=WD(100=53.0),PF0040027=WD40=PU(33.3=19.7)
A:
PF0040027=WD40=PD(64.1=55.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTCTGCAAAGCTGTGGGA
R:
GATGTAGTCCCCAGGGCTGT
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]