GgaEX1024824 @ galGal3
Exon Skipping
Gene
ENSGALG00000000864 | Q5ZK75_CHICK
Description
NA
Coordinates
chr17:11108101-11109856:-
Coord C1 exon
chr17:11109662-11109856
Coord A exon
chr17:11108805-11108938
Coord C2 exon
chr17:11108101-11108187
Length
134 bp
Sequences
Splice sites
3' ss Seq
AGAATGCTCTTTGCTTGTAGTTT
3' ss Score
4.46
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
GATCAGATGACTTGTCTGCAAAACTGTGGGATGTAAGCACAGGTCAGTGCATCTATGGTATCCAGACACACACTTGTGCTACAGTGAAGTTTGATGAACAAAAACTTGTAACGGGCTCTTTTGATAACACAGTAGCCTGTTGGGAATGGAGCTCTGGGGCAAAGACACAGCATTTCAGAGGACACACTGGTGCAG
Seq A exon
TTTTTAGTGTGGACTACAATGATGAACTTGATGTTCTAGTCAGTGGCTCTGCAGACTTCACTGTGAAAGTGTGGGCCTTATCAACAGGAACGTGCCTGAATACCCTTACTGGACACACAGAATGGGTCACTAAG
Seq C2 exon
GTAGTTTTGCAGAAGTGCAAAGTCAAATCTCTTATGCATAGTCCTGGGGATTATATTCTTTTAAGTGCAGATAAGTATGAAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000864-'6-7,'6-4,7-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(28.6=15.2),PF0040027=WD40=WD(100=53.0),PF0040027=WD40=PU(33.3=19.7)
A:
PF0040027=WD40=PD(64.1=55.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGACTTGTCTGCAAAACTGTG
R:
TCCCCAGGACTATGCATAAGAGA
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]