DreEX6011837 @ danRer10
Exon Skipping
Gene
ENSDARG00000027501 | usp20
Description
ubiquitin specific peptidase 20 [Source:ZFIN;Acc:ZDB-GENE-040426-1219]
Coordinates
chr5:32698488-32701088:+
Coord C1 exon
chr5:32698488-32698663
Coord A exon
chr5:32700852-32700950
Coord C2 exon
chr5:32701035-32701088
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGTGCTTTTCAATAGAGT
3' ss Score
8.28
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
CTAAAGAACGAAATGCGCTCATTGGCTGTGGTCAAAGCCGTGACGCACGCTTCTGCTGTATTCAGTATGGATGCTGCTTAGTAGTAACGTTACACTGCTTCCCACCACTGTTACAAACACCTCCGATTGGCCTAAAATGACTATCTATGAGCGATATTTTTGTTTCTGTATGACAG
Seq A exon
AGTGAGAAGAAAATCAGGATGACTGACAGCGGGGATCTTTGTCCTCACTTGGACTCGATTGGTGAAGTTACTAAAGAAGAACTGATTCAGAAATCAAAG
Seq C2 exon
GGCACGTGTCAGTCATGTGGAGTAGGTGGACCAAATCTCTGGGCATGTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027501-'0-3,'0-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0214814=zf-UBP=PU(22.7=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTGGCTGTGGTCAAAGCC
R:
CTCCACATGACTGACACGTGC
Band lengths:
180-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]