HsaEX1043167 @ hg38
Exon Skipping
Gene
ENSG00000136878 | USP20
Description
ubiquitin specific peptidase 20 [Source:HGNC Symbol;Acc:HGNC:12619]
Coordinates
chr9:129849813-129856360:+
Coord C1 exon
chr9:129849813-129849924
Coord A exon
chr9:129852540-129852636
Coord C2 exon
chr9:129856307-129856360
Length
97 bp
Sequences
Splice sites
3' ss Seq
TTGCTTGTGTCTTCTCATAGGTG
3' ss Score
10.62
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GCTCCTTGCCAGAGGCCTCCACTCACTCCAGACCCCTATAGCCCGTCGCTGTCAGCTGTCAACAAAGGATGCGAATGCTGGCCGCTTCCTGTGGGCTTCGTGTCACCCAGAG
Seq A exon
GTGAGCCCAGGCCAGGATGGGGGACTCCAGGGACCTTTGCCCTCACCTTGACTCCATAGGAGAGGTGACCAAAGAGGACTTGCTGCTCAAATCTAAG
Seq C2 exon
GGAACCTGTCAGTCGTGTGGGGTCACCGGACCAAACCTATGGGCCTGTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136878-'17-13,'17-12,21-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0214814=zf-UBP=PU(22.7=83.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGAGGCCTCCACTCA
R:
CTGCAGACAGGCCCATAGGTT
Band lengths:
159-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains