MmuEX0050864 @ mm10
Exon Skipping
Gene
ENSMUSG00000026854 | Usp20
Description
ubiquitin specific peptidase 20 [Source:MGI Symbol;Acc:MGI:1921520]
Coordinates
chr2:30996048-31000110:+
Coord C1 exon
chr2:30996048-30996147
Coord A exon
chr2:30998773-30998868
Coord C2 exon
chr2:31000057-31000110
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATTGCTGTGTCTCCTTACAGGGG
3' ss Score
11.1
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GTACTTGGCTCAAGACTTTACTGCAGAGCCCCTCGGCAGCTGGTCACTGTCCCAAGAGAATGCCCACATCGGCCTCCTCCTGTGTGTGCAGCTGAGTCAG
Seq A exon
GGGAGGCTGGCCAGAATGGGGGACGCCAGAGACCTCTGCCCTCACCTGGACTGCATAGGGGAGGTGACCAAAGAGGATTTGCTGCTTAAATCTAAG
Seq C2 exon
GGAACCTGCCAGTCATGTGGGGTTGCTGGACCTAACCTATGGGCTTGCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026854_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0214814=zf-UBP=PU(22.7=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGGCTCAAGACTTTACTGCA
R:
TGGAGGCAAGCCCATAGGTTA
Band lengths:
151-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types