RnoEX0097096 @ rn6
Exon Skipping
Gene
ENSRNOG00000007710 | Usp20
Description
ubiquitin specific peptidase 20 [Source:RGD Symbol;Acc:1305621]
Coordinates
chr3:9829394-9833064:+
Coord C1 exon
chr3:9829394-9829490
Coord A exon
chr3:9831886-9831981
Coord C2 exon
chr3:9833011-9833064
Length
96 bp
Sequences
Splice sites
3' ss Seq
GATTGCTCTGTTCCTTACAGGGG
3' ss Score
9.41
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GTGCCTTGTCGGAGGCTTTACTGCCGAGCCCCTTGTCAGCCGGTCACTGTCCACAGAAAATGTACACATCGGCCTCCTCTGTGTGCTGCTGAGTCAG
Seq A exon
GGGAGGCTGGCCAGAATGGGGGACGCCAGAGACATCTGCCCTCACCTGGACTCCATAGGGGAGGTGACCAAAGAGGACTTGCTGCTTAAATCTAAG
Seq C2 exon
GGGACCTGCCAGTCCTGTGGTGTTGCTGGACCTAACCTATGGGCTTGCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007710_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.012 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0214814=zf-UBP=PU(22.7=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGTCGGAGGCTTTACTGC
R:
AGGCAAGCCCATAGGTTAGGT
Band lengths:
144-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]