BtaEX6046663 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020311 | USP20
Description
Bos taurus ubiquitin specific peptidase 20 (USP20), mRNA. [Source:RefSeq mRNA;Acc:NM_001105333]
Coordinates
chr11:100246775-100255417:+
Coord C1 exon
chr11:100246775-100246889
Coord A exon
chr11:100250303-100250399
Coord C2 exon
chr11:100255364-100255417
Length
97 bp
Sequences
Splice sites
3' ss Seq
TCCCTTGTGTTTCCTTATAGGTG
3' ss Score
12.89
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTTCCCCAGCAGAAGCCTGTGCTCACCCCAGCCCAGCGCAGCAACTCACCACCGTTGGCCGGGACCGAAGAATGCGGAGGGTGACTGCCTCCGGGGGCTGTCGCTTTGCACAGAG
Seq A exon
GTGAGCCCGGGCCAGCATGGGGGACTCCAGGGACCTTTGTCCTCATCTTGACTCGATAGGGGAGGTGACCAAAGAGGACTTGCTGCTCAAATCCAAG
Seq C2 exon
AGCACCTGTCAGTCATGCGGGGTTTCTGGACCCAACCTGTGGGCCTGTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020311-'6-5,'6-1,8-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0214814=zf-UBP=PU(23.1=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCCCAGCAGAAGCCTG
R:
GGAGACAGGCCCACAGGTT
Band lengths:
167-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]