GgaEX1062491 @ galGal4
Exon Skipping
Gene
ENSGALG00000004142 | USP20
Description
ubiquitin specific peptidase 20 [Source:HGNC Symbol;Acc:HGNC:12619]
Coordinates
chr17:5709761-5712564:+
Coord C1 exon
chr17:5709761-5709778
Coord A exon
chr17:5712024-5712127
Coord C2 exon
chr17:5712511-5712564
Length
104 bp
Sequences
Splice sites
3' ss Seq
AGTGCCCTTTCTTGTCCCAGGAA
3' ss Score
8.65
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
CGGGGTCGGGCCCGGCAG
Seq A exon
GAAAACACCTTCCTGCAGTGAGAATGGGGGATACGAGAGACATCTGCCCTCACCTGGATTCCATAGGAGAGGTGACCAGGGATGATCTGCTGCTCAAATCTAAG
Seq C2 exon
GGAACTTGCCAGTCATGTGGAGCTGTGGGACCAAATCTCTGGGCTTGTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004142-'0-3,'0-1,7-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0214814=zf-UBP=PU(22.7=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]