RnoEX0097097 @ rn6
Exon Skipping
Gene
ENSRNOG00000007710 | Usp20
Description
ubiquitin specific peptidase 20 [Source:RGD Symbol;Acc:1305621]
Coordinates
chr3:9831886-9835624:+
Coord C1 exon
chr3:9831886-9831981
Coord A exon
chr3:9833011-9833064
Coord C2 exon
chr3:9835562-9835624
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTCCTACCACTCTCCCACAGGGG
3' ss Score
9.73
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGGAGGCTGGCCAGAATGGGGGACGCCAGAGACATCTGCCCTCACCTGGACTCCATAGGGGAGGTGACCAAAGAGGACTTGCTGCTTAAATCTAAG
Seq A exon
GGGACCTGCCAGTCCTGTGGTGTTGCTGGACCTAACCTATGGGCTTGCCTCCAG
Seq C2 exon
GTCACCTGCCCCTATGTTGGCTGTGGAGAGTCTTTTGCTGACCATAGCAGCATTCATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007710_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
PF0214814=zf-UBP=PU(22.7=83.3)
C2:
PF0214814=zf-UBP=FE(30.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCTGGCCAGAATGGGG
R:
GCAAAAGACTCTCCACAGCCA
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]