GgaEX6015179 @ galGal4
Exon Skipping
Gene
ENSGALG00000004142 | USP20
Description
ubiquitin specific peptidase 20 [Source:HGNC Symbol;Acc:HGNC:12619]
Coordinates
chr17:5712024-5713257:+
Coord C1 exon
chr17:5712024-5712127
Coord A exon
chr17:5712511-5712564
Coord C2 exon
chr17:5713195-5713257
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTTTATCATGAATACGCAGGGA
3' ss Score
5.66
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAAAACACCTTCCTGCAGTGAGAATGGGGGATACGAGAGACATCTGCCCTCACCTGGATTCCATAGGAGAGGTGACCAGGGATGATCTGCTGCTCAAATCTAAG
Seq A exon
GGAACTTGCCAGTCATGTGGAGCTGTGGGACCAAATCTCTGGGCTTGTCTTCAG
Seq C2 exon
ATCGGGTGTCCTTACGTTGGCTGTGGGGAGTCCTTTGCTGACCACAGCACCCTTCATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004142-'7-4,'7-3,8-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0214814=zf-UBP=PU(22.7=83.3)
C2:
PF0214814=zf-UBP=FE(30.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTGCAGTGAGAATGGGG
R:
CTGTGGTCAGCAAAGGACTCC
Band lengths:
143-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]