BtaEX6046662 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020311 | USP20
Description
Bos taurus ubiquitin specific peptidase 20 (USP20), mRNA. [Source:RefSeq mRNA;Acc:NM_001105333]
Coordinates
chr11:100250303-100257229:+
Coord C1 exon
chr11:100250303-100250399
Coord A exon
chr11:100255364-100255417
Coord C2 exon
chr11:100257167-100257229
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTTTCCCCGCCTCACACAGAGC
3' ss Score
7.47
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTGAGCCCGGGCCAGCATGGGGGACTCCAGGGACCTTTGTCCTCATCTTGACTCGATAGGGGAGGTGACCAAAGAGGACTTGCTGCTCAAATCCAAG
Seq A exon
AGCACCTGTCAGTCATGCGGGGTTTCTGGACCCAACCTGTGGGCCTGTCTCCAG
Seq C2 exon
GTCTCCTGCTCCTACGTTGGCTGCGGAGAATCCTTCGCTGACCACAGCACCCTGCACGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020311-'8-6,'8-5,11-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0214814=zf-UBP=PU(23.1=83.3)
C2:
PF0214814=zf-UBP=FE(30.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCATGGGGGACTCCA
R:
TGTGGTCAGCGAAGGATTCTC
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]