MmuEX6100318 @ mm10
Exon Skipping
Gene
ENSMUSG00000026854 | Usp20
Description
ubiquitin specific peptidase 20 [Source:MGI Symbol;Acc:MGI:1921520]
Coordinates
chr2:30996048-31002618:+
Coord C1 exon
chr2:30996048-30996147
Coord A exon
chr2:31000057-31000110
Coord C2 exon
chr2:31002556-31002618
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTCCTGCCACTCTCCCACAGGGA
3' ss Score
10.61
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTACTTGGCTCAAGACTTTACTGCAGAGCCCCTCGGCAGCTGGTCACTGTCCCAAGAGAATGCCCACATCGGCCTCCTCCTGTGTGTGCAGCTGAGTCAG
Seq A exon
GGAACCTGCCAGTCATGTGGGGTTGCTGGACCTAACCTATGGGCTTGCCTCCAG
Seq C2 exon
GTCACCTGCCCTTACGTTGGCTGTGGAGAGTCTTTTGCTGACCATAGCAGCATTCATGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026854_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0214814=zf-UBP=PU(22.7=83.3)
C2:
PF0214814=zf-UBP=FE(30.3=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTTTACTGCAGAGCCCCT
R:
TGGTCAGCAAAAGACTCTCCAC
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types