GgaEX6015179 @ galGal3
Exon Skipping
Gene
ENSGALG00000004142 | F1P4F0_CHICK
Description
NA
Coordinates
chr17:6268059-6269256:+
Coord C1 exon
chr17:6268059-6268126
Coord A exon
chr17:6268510-6268563
Coord C2 exon
chr17:6269194-6269256
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTTTATCATGAATACGCAGGGA
3' ss Score
5.66
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAGACATCTGCCCTCACCTGGATTCCATAGGAGAGGTGACCAGGGATGATCTGCTGCTCAAATCTAAG
Seq A exon
GGAACTTGCCAGTCATGTGGAGCTGTGGGACCAAATCTCTGGGCTTGTCTTCAG
Seq C2 exon
ATCGGGTGTCCTTACGTTGGCTGTGGGGAGTCCTTTGCTGACCACAGCACCCTTCATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004142-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0214814=zf-UBP=PU(22.7=83.3)
C2:
PF0214814=zf-UBP=FE(30.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCTGCCCTCACCTGGAT
R:
CATGAAGGGTGCTGTGGTCAG
Band lengths:
124-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]