HsaEX0069637 @ hg38
Exon Skipping
Gene
ENSG00000136878 | USP20
Description
ubiquitin specific peptidase 20 [Source:HGNC Symbol;Acc:HGNC:12619]
Coordinates
chr9:129834698-129858112:+
Coord C1 exon
chr9:129834698-129852636
Coord A exon
chr9:129856307-129856360
Coord C2 exon
chr9:129858050-129858112
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTCCTCTCAACTCACACAGGGA
3' ss Score
7.38
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
ATCCTTGGACGGACATGGATTTGGCCTCCTCTAACAAAACATCTGTGGTTTTAGATTGTCTGGTGTGCAGCTCCCTGCATGCATGCAGGACTCCCATGTCTTCCCTACCAATAATTCTGATCACTACACCTGTCACCTGCCATGGGCTTTCCCTACATCAGGGACTACACCAGGCATTTGACAGACATTGTCTCCGTGACCTAGGAGCGACCCACTGGGGCAACTGTTATCTTCTTAGACAAGGAAAGTGATGCTCAGAGAGGTTAAGCAACTTCCCTGCGTTACCAGCTGGTTTGTGGCAGACCAGGACTCAAGGCCAAAGTCATGTACTTAACCACTCACCTCCCCACCTCCTGCCAACACTGGCTGCCATTAACCCGGGATTGCTTGTGTCTTCTCATAGGTGAGCCCAGGCCAGGATGGGGGACTCCAGGGACCTTTGCCCTCACCTTGACTCCATAGGAGAGGTGACCAAAGAGGACTTGCTGCTCAAATCTAAG
Seq A exon
GGAACCTGTCAGTCGTGTGGGGTCACCGGACCAAACCTATGGGCCTGTCTGCAG
Seq C2 exon
GTTGCCTGCCCCTATGTTGGCTGCGGAGAATCCTTTGCTGACCACAGCACCATTCATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136878-'21-15,'21-13,23-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0214814=zf-UBP=PU(22.7=83.3)
C2:
PF0214814=zf-UBP=FE(30.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACCCGGGATTGCTTGTGTC
R:
CCAACATAGGGGCAGGCAAC
Band lengths:
147-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development