DreEX6011836 @ danRer10
Exon Skipping
Gene
ENSDARG00000027501 | usp20
Description
ubiquitin specific peptidase 20 [Source:ZFIN;Acc:ZDB-GENE-040426-1219]
Coordinates
chr5:32700852-32701461:+
Coord C1 exon
chr5:32700852-32700950
Coord A exon
chr5:32701035-32701088
Coord C2 exon
chr5:32701399-32701461
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTTTTTTTTTTCAAGGGC
3' ss Score
9.46
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
AGTGAGAAGAAAATCAGGATGACTGACAGCGGGGATCTTTGTCCTCACTTGGACTCGATTGGTGAAGTTACTAAAGAAGAACTGATTCAGAAATCAAAG
Seq A exon
GGCACGTGTCAGTCATGTGGAGTAGGTGGACCAAATCTCTGGGCATGTCTGCAG
Seq C2 exon
TGTGACTGTCCTTATGTAGGCTGTGGAGAGTCGTATTCAGACCACAGTACTATTCATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027501-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0214814=zf-UBP=PU(22.7=83.3)
C2:
PF0214814=zf-UBP=FE(30.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACAGCGGGGATCTTTGTC
R:
TGTGCATGAATAGTACTGTGGTCTG
Band lengths:
139-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]