DreEX6013462 @ danRer10
Exon Skipping
Gene
ENSDARG00000099139 | fbxw5
Description
F-box and WD repeat domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2571]
Coordinates
chr5:53818368-53821963:-
Coord C1 exon
chr5:53821780-53821963
Coord A exon
chr5:53821359-53821506
Coord C2 exon
chr5:53818368-53818580
Length
148 bp
Sequences
Splice sites
3' ss Seq
TGAGTTGATGTGTGTTTTAGGTA
3' ss Score
9.27
5' ss Seq
TAGGTGCGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GGTTGTCAGAGCATAGCCACTCGTGAGCGAGAGTTAGAGACGAAGGTGGCCAGGCTGATGGGCAGCAGACGCACCAAAGCTCCTGAACTAAATCTGGTGTCTCCTTCAAATGTTGGAGAAGGAGAGGACATGACCTATCTGCTCTTCACCACTGGCAGCCTCACATATTCCCCTCACCAAATAG
Seq A exon
GTATCAAGCGGATTATGCCTGATCAAATGACAACATGTGGTCCTGTCTTGGGCGAGGAGCGCAGTTCTGAGGAATTCTTTGACTCGTTGGATCATGTGATCGACATACACGGCCACATCATCGGCATGGGGCTGTCACCTGACCATAG
Seq C2 exon
GTACTTGTACGTGAACAGTCGAGCATGGCCAGCAGGCTGTGTGATCTCGGACCCCATGTCCCCTCCACCAATCGCAGAGGAGATAGACCTGCATGTGATTGATCTTAAGAGTCTGAGGGAGGAGCGCCGCAGCCTTCGAGCTCACCGGGCCTTCACACCAAATGATGAGTGTTTCTTTATCTTCCTCGATGTCAGCAGAGACTTTGTCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099139-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=0.100 C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTAGAGACGAAGGTGGCCA
R:
GCAGGTCTATCTCCTCTGCGA
Band lengths:
245-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]