BtaEX6047647 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010515 | FBXW5
Description
F-box and WD repeat domain containing 5 [Source:HGNC Symbol;Acc:HGNC:13613]
Coordinates
chr11:106289609-106290660:+
Coord C1 exon
chr11:106289609-106290026
Coord A exon
chr11:106290228-106290375
Coord C2 exon
chr11:106290448-106290660
Length
148 bp
Sequences
Splice sites
3' ss Seq
CACCCCCGCCCTCCTTGCAGGCA
3' ss Score
11.3
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GACGTGGAGTCGGAGAACGTGAACGTGGTGAAGCGGCTCTTCAAGATCCAGAACCTCAACGCCAGCACCATCCGCACCGTCATGGTGGCCGACTGCAGCCGCTTCGACAGCCCCGACCTCCTGCTGGACGCCGGCGCCCCCGGCACAGACTCCAGCCGCGTCTTCGACCTGGGCAGCGATGGCGAGGATGAGGAGAGCGACCCGGGTCCGGCCCGCGCCAAGGGCCTGCGGCGCCTCCTGGACGGGTTCCTGGAGGGCCGGGCACAGCCCCCGCTGCCGGAGAGCACGCTGGAGACTAAGGTGGCCAAGCTGCTGGCCCAGGGCCACACCAAGCCCCCGGAGCAGGGCAGGGCCGCCGCCGGGAACAAGCTCCTCATCTTCACCACCGGCTGCCTCACCTACTCACCGCACCAGATCG
Seq A exon
GCATCAAGCAGATCTTACCGCACCAGATGACCACAGCCGGGCCCGTTCTGGGCGAGGGCCGGGGCTCCGACGCCTTCTTCGATGCGCTGGACCACGTCATCGACGTGCACGGACATATCATCGGCATGGGCCTGTCCCCCGACAACAG
Seq C2 exon
GTACCTGTACGTGAACAGCCGCGCCTGGCCTAGCGGCTCGGTGGTGGCTGACCCCATGCAGCCGCCACCCATCGCCGAGGAGATCGACCTGCTGGTTTTCGATCTCAAGACCATGCGGGAGGTGAAGCGGGCTCTGCGCGCGCACCGCGCCTACACGCCCAACGACGAGTGCTTCTTCATCTTCCTGGACGTCAGCAGGGACTTCGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010515-'10-17,'10-16,11-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=0.120 C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACTAAGGTGGCCAAGCTG
R:
CTCCCGCATGGTCTTGAGATC
Band lengths:
248-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]