MmuEX6099559 @ mm10
Exon Skipping
Gene
ENSMUSG00000015095 | Fbxw5
Description
F-box and WD-40 domain protein 5 [Source:MGI Symbol;Acc:MGI:1354731]
Coordinates
chr2:25503437-25505471:+
Coord C1 exon
chr2:25503437-25503866
Coord A exon
chr2:25504180-25504327
Coord C2 exon
chr2:25504710-25505471
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCACCCTGGTCTCCATGCAGGCA
3' ss Score
9.53
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GATGTGGAGTCAGAGAATGTCAACGTGGTAAAGCGGCTCTTTAAGATCCAGAACCTCAATGCCAGCACCATCCGCACAGTGATGGTGGCTGACTGTAGCCGCTTTGATAGCCCGGACCTCCTGCTGGATGCTAGCGACCAGGCTGGGCTCCCCTGCCGAGTCTTTGACCTAGGTGGGGACACTGAAGAAGAGGCCACTGACCCAGGTTTGCACACTTCTGGTTCTGACCACGTCAAGAAAGGTTTACGGCGTGTGTTTGATAGCGTCTTGGATGGACACGGACAGCTATCGGATTGTGCACTGGAGACCAAGGTGGCTGAGCTGCTGGCCCAGGGCCACACCAAGCCTCCAGAGTGCAATGACGCTGACACCAGGAATAAGTACCTCATCTTCACCACTGGCTGCCTCACGTACTCACCGCATCAGATCG
Seq A exon
GCATCAAGCAGATCCTGCCACACCAGATGACAACTGCAGGGCCCGTGCTGGGCGAGGGCCGGGGCTCTGATGCCTTCTTTGATGCCCTGGACCATGTCATTGATGTGCATGGGCACATCATTGGCATGGGCCTGTCTCCTGATAACAG
Seq C2 exon
TGGGGCTGAAGATCGGCATGGCTATATCTGGGACCGCCACTACAACATCTGCCTAGCCAAGCTGCGGCATGAGGATGTGGTCAACTCCGTGGCTTTTAGCCCCCAGGAGCAGGAACTCTTGCTGACAGCCAGCGACGATGCCACTATCAAAGCCTGGCGTTCACCACGCATTGTTCGTGTTCTGCAGGCTCCACGCCCTCGCCCCCGCCCTCGCCCCCGCCCCTTCTTCTCCTGGTTTGCCAGCCATAGGCGCTGAAGGCTTCAGTGATTTGAGCCATTGGAACCTACTGGGGAAAATGGTACCCCGTGGTTCTTTATTGCACTGGGGCAGAGTAGCTCATAGCAGCAATGCCTTAGGAGGGGCAGCCTGACCCCAACACACACACACACACACACACACACAAAACCTGCTCACTTAGCCATAAGGCTTAGCACTAGGGTAGCCCTTGTTGGCAGCACCAGATCCCATGCTAGCCTCTTGGCTAGCTTGGGGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015095_MULTIEX1-7/8=6-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=0.110 C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0040027=WD40=WD(100=43.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGGACACGGACAGCTAT
R:
ACGGAGTTGACCACATCCTCA
Band lengths:
252-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types