HsaEX6064126 @ hg38
Exon Skipping
Gene
ENSG00000159069 | FBXW5
Description
F-box and WD repeat domain containing 5 [Source:HGNC Symbol;Acc:HGNC:13613]
Coordinates
chr9:136941251-136942466:-
Coord C1 exon
chr9:136942046-136942466
Coord A exon
chr9:136941537-136941684
Coord C2 exon
chr9:136941251-136941463
Length
148 bp
Sequences
Splice sites
3' ss Seq
CACCGTAGCCCTCCCTGCAGGCA
3' ss Score
5.5
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GATGTGGAGTCAGAGAACGTCAACGTGGTGAAGCGGCTGTTCAAGATCCAGAACCTCAATGCCAGCACCGTCCGCACGGTGATGGTGGCCGACTGCAGCCGCTTCGACAGCCCTGACCTGCTGCTGGAAGCCGGTGACCCGGCCACGTCCCCCTGCCGCATCTTTGACCTGGGCAGCGACAACGAGGAGGTGGTGGCTGGCCCGGCCCCCGCCCACGCCAAGGAGGGCTTGCGGCACTTTCTGGACCGCGTGCTGGAGGGGCGGGCGCAGCCACAGCTGTCGGAGCGCATGCTAGAGACCAAGGTGGCCGAGCTGCTGGCCCAGGGCCACACCAAGCCACCCGAGCGCAGTGCCACAGGCGCCAAGAGCAAGTACCTCATCTTCACCACTGGCTGCCTCACCTACTCCCCACACCAGATCG
Seq A exon
GCATCAAGCAGATCCTGCCACACCAGATGACCACGGCAGGGCCCGTGCTGGGTGAGGGCCGGGGCTCCGATGCCTTCTTCGACGCGCTGGACCACGTCATAGACATACACGGACACATCATCGGCATGGGCCTGTCGCCCGACAACAG
Seq C2 exon
GTACCTGTACGTGAACAGCCGCGCCTGGCCCAACGGTGCGGTGGTGGCCGACCCCATGCAGCCGCCACCAATCGCGGAGGAGATTGACCTGCTGGTGTTCGACCTCAAGACCATGCGGGAGGTGAGGCGGGCTCTGCGTGCGCACCGCGCCTACACGCCCAACGACGAGTGCTTCTTCATCTTCCTGGACGTCAGCAGGGACTTCGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159069-'11-24,'11-21,14-24
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=0.060 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCATCTTCACCACTGGCT
R:
TGCTGACGTCCAGGAAGATGA
Band lengths:
245-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains