GgaEX1024832 @ galGal3
Exon Skipping
Gene
ENSGALG00000008966 | FBXW5
Description
NA
Coordinates
chr17:903492-907630:+
Coord C1 exon
chr17:903492-903978
Coord A exon
chr17:906256-906403
Coord C2 exon
chr17:907336-907630
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCCTCCTTTCTGTTCCCAAGGGA
3' ss Score
7.97
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGCATAGAGTCTGAGAATGTGAACGTAGTGAAGAGACTGTTCAAAATCCAGAATCTGAATGCCAGCACTATCCGGACCGTGATGGTGGCTGACTGCAGCCGGTACGATTCCCCAGACCTGCTCCTGGACTACGAGGAGCAGCTGGCTGCCTCTTCCACCTCCACCTGCCCAGTCTTTGATCTCGGCAGTGACAGCGAAGAAGAGGAGTCCAAGCCCAAGCAGACTCCAGAGCCAGCAGTACAGGAAATGCCGGATGATGGGGGTGTGCCAGCAGAGGATGAGCTGCAGCAGTTCTTTGATGATATCATGGGGGGCTGTGTGAGGCCTGCCATGACTGAGGCTGAGCTGGAGAACAAAGTGGCTGAGCTGTTCATACGCAACAGAACTAAACCGCCCGAGGTGAACCTGCTTTCCACGGACAGCAACAGCAAGACAAAATACTTAATTTTCACCACAGGGTGCCTCACCTACTCTCCGCACCAGATAG
Seq A exon
GGATTAAAAGGATCCTGCCCCATCAGATGACAACTGCTGGGCCGGTGCTTGGGGAGGAGAGGCGTTCGGATGAGTTCTTTGACTCGCTGGATCACGTCATTGACATCCACGGGCACATAATTGGCATGGGTCTCTCCCCTGACCACCG
Seq C2 exon
ATACCTGTATGTGAACAGCCGTGCCTGGCCTCGGGACTGCGTCATCTTTGACCCCATGCAGCCACCCCCCATTGCTGAGGAGATCGATCTGCATGTGTTTGACTTGAAGACAATGAAGGAAGTGAAACGAGCCCTCCGTGCGCATCGGGCCTACACACCCAACGAGGAGTGTTTCTTCATCTTCCTGGATGTCAGCAGGGACTTCGTGGCAAGGTGTGTGGCACTGGGGGTGGGCAGGATGATGCCTGAGGTATGGGACGGCCTTGGGTGTTGCACTGTGGGCTGTTGTGCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008966-'10-12,'10-9,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=0.080 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGCTGAGCTGGAGAACAA
R:
TGCAGATCGATCTCCTCAGCA
Band lengths:
245-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]