RnoEX0035475 @ rn6
Exon Skipping
Gene
ENSRNOG00000028674 | Fbxw5
Description
F-box and WD repeat domain containing 5 [Source:RGD Symbol;Acc:1305661]
Coordinates
chr3:2729225-2730405:+
Coord C1 exon
chr3:2729225-2729654
Coord A exon
chr3:2729964-2730111
Coord C2 exon
chr3:2730193-2730405
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCACCCTGCTCTCCACGCAGGCA
3' ss Score
10.66
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GATGTGGAGTCAGAGAACGTCAACGTGGTAAAGCGGCTCTTTAAGATCCAGAACCTCAATGCCAGCACCATCCGCACCGTGATGGTGGCTGACTGCAGCCGCTTTGATAGCCCGGACCTCCTGCTGGATGCTGGTGACCAGGCTGGGCTCCCCTGCCGAGTCTTTGACCTAGGTGGGGACACTGAAGAAGAGGCCACTGACCCAGGTTTGCACACCTCTGGTTCTGGCCATGTCAAGGAAGGTTTACGGCGTGTGTTTGATAGCGTCCTGGATGGACATGGACAGCTGTCAGATTGTGCACTGGAGACCAAGGTGGCTGAGCTGCTGGCCCAGGGCCACACCAAGCCCCCAGAGTGTCCTGACGCTGACAGCAGGAACAAGTACCTCATCTTCACCACTGGCTGCCTCACGTACTCACCTCATCAGATCG
Seq A exon
GCATCAAGCAGATCCTGCCGCACCAGATGACAACTGCAGGGCCCGTGCTGGGCGAGGGCCGGGGCTCTGATGCCTTCTTTGATGCCCTGGACCATGTCATTGATGTGCATGGGCACATCATTGGCATGGGCCTGTCTCCCGATAACAG
Seq C2 exon
GTACCTGTATGTGAATAGCCGTGCCTGGCCCCCTGGCTCAGTGGTCGCCGACCCCATGCAGCCACCACCCATTGCAGAGGAGATTGACTTGCTGGTGTTTGATCTGAAGACCATGCGGGAGGTGAAGCGAGCTCTGCGAGCACACCGTGCCTACACACCCAATGATGAGTGCTTCTTCATCTTTCTGGATGTCAGCAGGGATTTTGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028674-'11-18,'11-17,12-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.100 C2=0.069
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACATGGACAGCTGTCAGA
R:
ATCTCCTCTGCAATGGGTGGT
Band lengths:
242-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]