GgaEX1024832 @ galGal4
Exon Skipping
Gene
ENSGALG00000008966 | FBXW5
Description
F-box/WD repeat-containing protein 5 [Source:RefSeq peptide;Acc:NP_001025865]
Coordinates
chr17:522789-526845:+
Coord C1 exon
chr17:522789-523275
Coord A exon
chr17:525553-525700
Coord C2 exon
chr17:526633-526845
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCCTCCTTTCTGTTCCCAAGGGA
3' ss Score
7.97
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGCATAGAGTCTGAGAATGTGAACGTAGTGAAGAGACTGTTCAAAATCCAGAATCTGAATGCCAGCACTATCCGGACCGTGATGGTGGCTGACTGCAGCCGGTACGATTCCCCAGACCTGCTCCTGGACTACGAGGAGCAGCTGGCTGCCTCTTCCACCTCCACCTGCCCAGTCTTTGATCTCGGCAGTGACAGCGAAGAAGAGGAGTCCAAGCCCAAGCAGACTCCAGAGCCAGCAGTACAGGAAATGCCGGATGATGGGGGTGTGCCAGCAGAGGATGAGCTGCAGCAGTTCTTTGATGATATCATGGGGGGCTGTGTGAGGCCTGCCATGACTGAGGCTGAGCTGGAGAACAAAGTGGCTGAGCTGTTCATACGCAACAGAACTAAACCGCCCGAGGTGAACCTGCTTTCCACGGACAGCAACAGCAAGACAAAATACTTAATTTTCACCACAGGGTGCCTCACCTACTCTCCGCACCAGATAG
Seq A exon
GGATTAAAAGGATCCTGCCCCATCAGATGACAACTGCTGGGCCGGTGCTTGGGGAGGAGAGGCGTTCGGATGAGTTCTTTGACTCGCTGGATCACGTCATTGACATCCACGGGCACATAATTGGCATGGGTCTCTCCCCTGACCACCG
Seq C2 exon
ATACCTGTATGTGAACAGCCGTGCCTGGCCTCGGGACTGCGTCATCTCTGACCCCATGCAGCCACCCCCCATTGCTGAGGAGATCGATCTGCATGTGTTTGACTTGAAGACAATGAAGGAAGTGAAACGAGCCCTCCGTGCGCATCGGGCCTACACACCCAACGAGGAGTGTTTCTTCATCTTCCTGGATGTCAGCAGGGACTTCGTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008966_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=0.120 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGCTGAGCTGGAGAACAA
R:
TGCAGATCGATCTCCTCAGCA
Band lengths:
245-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]