MmuEX6099559 @ mm9
Exon Skipping
Gene
ENSMUSG00000015095 | Fbxw5
Description
F-box and WD-40 domain protein 5 [Source:MGI Symbol;Acc:MGI:1354731]
Coordinates
chr2:25358957-25360149:+
Coord C1 exon
chr2:25358957-25359386
Coord A exon
chr2:25359700-25359847
Coord C2 exon
chr2:25359937-25360149
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCACCCTGGTCTCCATGCAGGCA
3' ss Score
9.53
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GATGTGGAGTCAGAGAATGTCAACGTGGTAAAGCGGCTCTTTAAGATCCAGAACCTCAATGCCAGCACCATCCGCACAGTGATGGTGGCTGACTGTAGCCGCTTTGATAGCCCGGACCTCCTGCTGGATGCTAGCGACCAGGCTGGGCTCCCCTGCCGAGTCTTTGACCTAGGTGGGGACACTGAAGAAGAGGCCACTGACCCAGGTTTGCACACTTCTGGTTCTGACCACGTCAAGAAAGGTTTACGGCGTGTGTTTGATAGCGTCTTGGATGGACACGGACAGCTATCGGATTGTGCACTGGAGACCAAGGTGGCTGAGCTGCTGGCCCAGGGCCACACCAAGCCTCCAGAGTGCAATGACGCTGACACCAGGAATAAGTACCTCATCTTCACCACTGGCTGCCTCACGTACTCACCGCATCAGATCG
Seq A exon
GCATCAAGCAGATCCTGCCACACCAGATGACAACTGCAGGGCCCGTGCTGGGCGAGGGCCGGGGCTCTGATGCCTTCTTTGATGCCCTGGACCATGTCATTGATGTGCATGGGCACATCATTGGCATGGGCCTGTCTCCTGATAACAG
Seq C2 exon
GTACCTGTATGTGAATAGCCGTGCCTGGCCCCCTGGCTCAGTGGTAGCCGACCCCATGCAGCCACCACCCATTGCGGAGGAGATTGACTTGCTGGTGTTTGATCTCAAGACCATGCGAGAGGTGAAGCGAGCTCTTCGAGCGCACCGTGCCTACACACCCAATGACGAGTGCTTCTTCATCTTCTTGGATGTCAGCAGGGATTTTGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015095-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.153 A=0.093 C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGGACACGGACAGCTAT
R:
GCAAGTCAATCTCCTCCGCAA
Band lengths:
254-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: