DreEX6015418 @ danRer10
Exon Skipping
Gene
ENSDARG00000100524 | abca3b
Description
ATP-binding cassette, sub-family A (ABC1), member 3b [Source:ZFIN;Acc:ZDB-GENE-050517-2]
Coordinates
chr3:12526847-12527675:+
Coord C1 exon
chr3:12526847-12527051
Coord A exon
chr3:12527221-12527440
Coord C2 exon
chr3:12527517-12527675
Length
220 bp
Sequences
Splice sites
3' ss Seq
GCCTGACATGTTCTCCTCAGGTG
3' ss Score
8.45
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GAGTCAGACAGGCTTTGCCATCGCCATAAACCTGATGTACGGCATGGCTTCATTAGCCAGCACCTTTGCCCTGCTCCTCGTGTCCGAGCGCTCGGTCAAGTCCAAGCACGTGCAGCAGGTCAGCGGGGTTTACCTCACCAACTTCTGGTTCTCTGCCCTGCTGTGGGACCTCATCAACTTCCTGTTACCCTGCTTGCTCATGCTG
Seq A exon
GTGGTCTTCAGAGTGTTCTCAGTGAAGGCGTTTGTAGCCCAAAACCACCTGGTGGATGTTCTGTTCTTGCTGCTTCTGTACGGCTGGGCGGTGATTCCTCTCATGTACTTGATGAGTTTCCTGTTTTCCACGGCCGCCACAGCCTACACGCGCCTCACCATCTTCAACATCATCAGCGGCACCGCCACCTTCCTCGCCGTCACCATCATGACCATACCTG
Seq C2 exon
AGCTGAATTTGCTCCATCTCTCGCACCTCCTGGATAAGGTCTTCCTGATCTTCCCGAATTACTGCCTGGGCATGTCCTTCACTGAGTTCTACCAGAACTACGAGATGATCACCTTCTGCACCTCCAGCCCCTTAGCGAAGTACATCTGCAAGTACTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100524-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(17.1=100)
A:
PF126982=ABC2_membrane_3=FE(18.3=100)
C2:
PF126982=ABC2_membrane_3=FE(13.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGTACGGCATGGCTTCA
R:
TGGAGGTGCAGAAGGTGATCA
Band lengths:
300-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]