GgaEX1005376 @ galGal3
Exon Skipping
Gene
ENSGALG00000001967 | E1BVQ5_CHICK
Description
NA
Coordinates
chr14:14338105-14339011:-
Coord C1 exon
chr14:14338807-14339011
Coord A exon
chr14:14338484-14338703
Coord C2 exon
chr14:14338105-14338263
Length
220 bp
Sequences
Splice sites
3' ss Seq
CTCACATTGCTGCACCCCAGGTG
3' ss Score
7.21
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AGGCCAGACCGGGTTTGCCATCGCCATCAACTTGCTGTATGGCATGGCCTCGCTCGCCAGCACCTTTGCTCTCCTGCTGGTCAGTGAGCGGGCCATCAAGGCCAAGCACGTCCAGTTCGTCAGCGGTGTCTACGTGGTCAACTTCTGGCTGTCTGCCTTGCTCTGGGACATCATCAATTTCCTCATTCCGTGTGCTCTGATGCTG
Seq A exon
GTGATATTCCAAGCCTTTGATGTGCAAGCCTTCACCCAAGACAGCCACCTTGTCGATGTGATGTTGATCTTCCTCCTTTATGGCTGGGCCATCATCCCCCTCATGTACCTCCTCAGCTTCTTCTTTTCAGTGGCGGCCACGGCTTACACCCGTCTCACCATCTTCAACATCCTCTCTGGCACAGCCACCTTCCTTGCTGTCACCATCATGAGCATCCCAG
Seq C2 exon
AATTGGGCTTGGTGGACCTCTCCAGAACTCTGGATAAAATCTTTCTCACCTTACCCAATTACTGCTTGGGTCAGTGCATCAGTGACTTCTACCAGAACTACGAGTTCATTCAGTTCTGCACCTCTTCTGTTGAAGCCATCTTCATATGCAAGGCATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(17.0=100)
A:
PF126982=ABC2_membrane_3=FE(18.2=100)
C2:
PF126982=ABC2_membrane_3=FE(13.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGCTCTCCTGCTGGTCAG
R:
TGCCTTGCATATGAAGATGGCT
Band lengths:
297-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]