RnoEX6046391 @ rn6
Exon Skipping
Gene
ENSRNOG00000050057 | Abca3
Description
ATP binding cassette subfamily A member 3 [Source:RGD Symbol;Acc:1307174]
Coordinates
chr10:13770823-13771965:+
Coord C1 exon
chr10:13770823-13771027
Coord A exon
chr10:13771387-13771606
Coord C2 exon
chr10:13771807-13771965
Length
220 bp
Sequences
Splice sites
3' ss Seq
CCTCCCGTGTGCTGCTGCAGGTG
3' ss Score
9.29
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GGGCCGGAAGGGATTTGACATTGCCCTCAATTTGCTCATCGCCATGGCATTTCTGGCCAGCACGTTTTCGATCCTGGCAGTCAGTGAGAGGGCCGTCCAAGCCAAGCACGTTCAGTTTGTGAGCGGTGTCCATGTGGCTACTTTCTGGCTCTCTGCTCTGCTGTGGGACCTCATCTCTTTCCTCGTTCCCAGTCTACTACTTCTG
Seq A exon
GTGGTGTTCCGAGCCTTCGATGTGCACGCCTTCACGAGGGATGGCCACATGGCTGACTTGCTGCTGCTGCTCATGCTCTATGGCTGGGCCATCATCCCCCTCATGTACCTCCTGAGCTTCTTCTTCTCAGCTGCGTCCACGGCTTACACCAGGCTGACCATATTCAACATCCTGTCGGGCATAGCCACCTTCATCGTGGTCACTATCATGAGGATCCCAG
Seq C2 exon
CTGTGAAGTTAGAAGAGCTTTCCAGAACCTTAGATCATGTGTTCTTGGTGCTGCCAAACCACTGCCTGGGGATGGCGGTCAGCAACTTCTATGAGAACTATGAGACTCGGCGCTACTGCACGTCCTCGGAGGTTGCTACCCACTACTGCAAGAAGTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050057-'30-37,'30-36,31-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(17.0=100)
A:
PF126982=ABC2_membrane_3=FE(18.2=100)
C2:
PF126982=ABC2_membrane_3=FE(13.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATTTGCTCATCGCCATGGC
R:
AGCGCCGAGTCTCATAGTTCT
Band lengths:
292-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]