DreEX6017583 @ danRer10
Exon Skipping
Gene
ENSDARG00000024708 | slc25a23b
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23b [Source:ZFIN;Acc:ZDB-GENE-040724-220]
Coordinates
chr3:34090686-34094777:+
Coord C1 exon
chr3:34090686-34090886
Coord A exon
chr3:34092861-34092984
Coord C2 exon
chr3:34094690-34094777
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTGCACTTCTCCACCCTCAGATT
3' ss Score
8.67
5' ss Seq
ATGGTCTGC
5' ss Score
0.84
Exon sequences
Seq C1 exon
ATGGGCGAGGAGGGAACGCGCTTCCCTTCGTGTTGGACATGGGCTCGCTGTCAAGATAACGGCGTGTCGGATCCAGAACGGGAGAAACGATGGGCCGAGCTGTTTGACCAGTTGGACCTTAATAAAGACGGGAGGATCGATTTGAATGAGCTGCGCACCGGATTAACCGCATGGGGGATCGTTCGCGGTGAAGTGGACGAG
Seq A exon
ATTGTACGTGTGAGCGACACCAATCATGACGGCCAGCTGGACTTTAAGGAATTTACTCAGTATCTACGCACACACGAGAAAGAGCTCCGACTCATGTTCAGCAGCCTGGACCACAACAACGATG
Seq C2 exon
GTCACATAGACGTTCCAGAGATTCAGCTCTCCTTGCGCAGCCTTGGAGTGAATGTATCCACAGAGCAGGCCTCCAGAATCCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024708-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(63.5=59.7)
A:
PF134991=EF-hand_7=PD(33.3=50.0),PF134991=EF-hand_7=PU(25.0=38.1)
C2:
PF134991=EF-hand_7=FE(45.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCAAGATAACGGCGTGT
R:
CTTTGCAGGATTCTGGAGGCC
Band lengths:
243-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]