DreEX6020723 @ danRer10
Exon Skipping
Gene
ENSDARG00000071086 | gpr155b
Description
G protein-coupled receptor 155b [Source:ZFIN;Acc:ZDB-GENE-110815-2]
Coordinates
chr6:10531397-10533081:-
Coord C1 exon
chr6:10532913-10533081
Coord A exon
chr6:10532614-10532769
Coord C2 exon
chr6:10531397-10531480
Length
156 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTGGCAGGTG
3' ss Score
11.01
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ACTGGTTATGCCTTTGATGTGCAGAGACATGGTGGAGCTGTTAGATGCTGGTAACTCCAGCTCAGCCAATCACTCCAGCTTATCTGATTATGCTTTCCTTTATGGAGTTTTCCCCACCGCTCCCAGTGTGGCCATCTACGCTGCGCAGTACAACATGGAGCTGGAGGTG
Seq A exon
GTGACCTCTGGTATGGTAATCAGCACGTTCCTGTCGGCGCCCATCATGTATGTGTCTGCATGGCTTTTGACCATTCCATGGATGGAGGCCTCGTTCCTGGTGAAGGAGCTGCAGGACGTCAGCTTTAACATCAGCATTGTCTGTCTGATAGCACTG
Seq C2 exon
GTTTGGACCCTTGCTGTCATGCTACTTAGTAAGAAGTTTCGGAGGATGCCACATATGTTTGCCACAAATCTGTTTTTAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071086-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=FE(32.2=100)
A:
PF0354713=Mem_trans=PD(10.9=36.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTTTGATGTGCAGAGACA
R:
TGTGCTAAAAACAGATTTGTGGCA
Band lengths:
244-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]