DreEX6023198 @ danRer10
Exon Skipping
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39941584-39945200:+
Coord C1 exon
chr6:39941584-39941670
Coord A exon
chr6:39944809-39944967
Coord C2 exon
chr6:39945102-39945200
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTGTTTCCACTCATCCGCAGCTT
3' ss Score
9.18
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
CATGCTGCTGATTTAGAGAAGAAACAAAATGATTCTGAGAACAAAAAGCTGCTTGGAACCGTCATTCAGTATGGCAATGTCATCCAG
Seq A exon
CTTCTCCATCTGAAGAGTAATAAATATCTGACGGTGAACAAGCGTTTGCCGGCTCTTCTTGAGAAGAATGCCATGCGTGTGACGCTGGACGCTGCAGGGAATGAAGGCTCGTGGTTTTACATCCAGCCCTTCTATAAGCTGCGCTCTATAGGGGATAAT
Seq C2 exon
GTGGTCATTGGAGATAAGGTCGTGTTAAACCCTGTCAATGCCGGACAGCCGCTGCACGCCAGCAGCCATCAGCTTGTGGATAATCCAGGCTGCAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(12.4=100)
A:
PF087096=Ins145_P3_rec=FE(23.0=100)
C2:
PF087096=Ins145_P3_rec=FE(14.2=100)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCTGCTGATTTAGAGAAGAAACA
R:
TTCATTGCAGCCTGGATTATCC
Band lengths:
186-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]