Special

DreEX6023198 @ danRer10

Exon Skipping

Gene
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39941584-39945200:+
Coord C1 exon
chr6:39941584-39941670
Coord A exon
chr6:39944809-39944967
Coord C2 exon
chr6:39945102-39945200
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTGTTTCCACTCATCCGCAGCTT
3' ss Score
9.18
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
CATGCTGCTGATTTAGAGAAGAAACAAAATGATTCTGAGAACAAAAAGCTGCTTGGAACCGTCATTCAGTATGGCAATGTCATCCAG
Seq A exon
CTTCTCCATCTGAAGAGTAATAAATATCTGACGGTGAACAAGCGTTTGCCGGCTCTTCTTGAGAAGAATGCCATGCGTGTGACGCTGGACGCTGCAGGGAATGAAGGCTCGTGGTTTTACATCCAGCCCTTCTATAAGCTGCGCTCTATAGGGGATAAT
Seq C2 exon
GTGGTCATTGGAGATAAGGTCGTGTTAAACCCTGTCAATGCCGGACAGCCGCTGCACGCCAGCAGCCATCAGCTTGTGGATAATCCAGGCTGCAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.103 A=0.000 C2=0.061
Domain overlap (PFAM):

C1:
PF087096=Ins145_P3_rec=FE(12.4=100)
A:
PF087096=Ins145_P3_rec=FE(23.0=100)
C2:
PF087096=Ins145_P3_rec=FE(14.2=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCTGCTGATTTAGAGAAGAAACA
R:
TTCATTGCAGCCTGGATTATCC
Band lengths:
186-345
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]