DreEX6025622 @ danRer10
Exon Skipping
Gene
ENSDARG00000029248 | fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2159]
Coordinates
chr2:8854390-8855908:+
Coord C1 exon
chr2:8854390-8854461
Coord A exon
chr2:8855596-8855653
Coord C2 exon
chr2:8855746-8855908
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTGGTCATTCTTCTCCACAGACA
3' ss Score
9.32
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
TCATTGGAAGAGGAGGAGAACAGATTTCAAGACTGCAACAGGAATCTGGCTGCAAAATACAGATTGCTCCTG
Seq A exon
ACAGTGGTGGTATGCCTGATAGGTCAGTGACGTTAACTGGTTCACCAGATGCAATCAT
Seq C2 exon
GACTGCTAAGAGGCTGCTCTCAGAGATTGTAGAGAAAGGCAGACCATCTCCAGCGTTCCACCACAATGATGGACCAGGGATGTCTGTTCATGAGATGATGATCCCTGCCTCCAAAGCGGGCCTGGTCATTGGAAAGGGAGGGGAAACGATCAAACAGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029248-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.900 C2=0.545
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(38.1=100)
A:
PF0001324=KH_1=FE(30.2=100)
C2:
PF0001324=KH_1=PD(9.5=10.9),PF0001324=KH_1=PU(38.5=45.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTGCAACAGGAATCTGGC
R:
GAACAGACATCCCTGGTCCAT
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]