RnoEX0037090 @ rn6
Exon Skipping
Gene
ENSRNOG00000043370 | Fubp1
Description
far upstream element binding protein 1 [Source:RGD Symbol;Acc:1591892]
Coordinates
chr2:257432983-257435048:+
Coord C1 exon
chr2:257432983-257433054
Coord A exon
chr2:257433226-257433283
Coord C2 exon
chr2:257434886-257435048
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTATTTAATTGTAGATA
3' ss Score
9.2
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
TAATTGGCAGAGGAGGTGAACAGATCTCACGCATACAGCAGGAATCTGGATGCAAAATACAGATAGCTCCTG
Seq A exon
ATAGTGGTGGCCTTCCAGAAAGGTCTTGTATGCTAACGGGAACGCCTGAATCTGTTCA
Seq C2 exon
ATCAGCAAAAAGATTATTGGACCAGATCGTTGAAAAGGGAAGACCAGCCCCTGGCTTTCATCATGGTGATGGACCTGGCAATGCAGTTCAGGAAATCATGATTCCAGCCAGCAAAGCAGGACTAGTTATCGGAAAGGGAGGAGAGACTATCAAACAACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043370-'9-13,'9-11,10-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=0.800 C2=0.564
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(38.1=100)
A:
PF0001324=KH_1=FE(30.2=100)
C2:
PF0001324=KH_1=PD(9.5=10.9),PF0001324=KH_1=PU(38.5=45.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCAGAGGAGGTGAACAGA
R:
CACCATGATGAAAGCCAGGGG
Band lengths:
137-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]