GgaEX6044514 @ galGal4
Exon Skipping
Gene
ENSGALG00000008939 | FUBP1
Description
far upstream element-binding protein 1 [Source:RefSeq peptide;Acc:NP_001006535]
Coordinates
chr8:17795256-17798338:+
Coord C1 exon
chr8:17795256-17795327
Coord A exon
chr8:17795561-17795618
Coord C2 exon
chr8:17798176-17798338
Length
58 bp
Sequences
Splice sites
3' ss Seq
ATTTTATTTTATAACCCTAGATA
3' ss Score
7.54
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
TCATCGGCAGAGGCGGAGAGCAGATCTCACGCATACAGCAAGAGTCAGGATGTAAAATACAGATTGCACCTG
Seq A exon
ATAGTGGGGGCCTGCCTGAAAGATCATGCATGCTAACTGGAACCCCAGAATCTGTTCA
Seq C2 exon
ATCAGCAAAAAGATTACTTGATCAAATAGTTGAAAAGGGAAGACCGGCACCTGGTTTTCATCATGGTGATGGACCTGGAAACGCAGTCCAAGAAATTATGATTCCAGCAAGTAAAGCAGGATTAGTTATTGGTAAAGGTGGAGAGACAATTAAGCAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939-'13-13,'13-9,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.480 A=0.750 C2=0.509
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(38.1=100)
A:
PF0001324=KH_1=FE(30.2=100)
C2:
PF0001324=KH_1=PD(9.5=10.9),PF0001324=KH_1=PU(38.5=45.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATCTCACGCATACAGCA
R:
TTCTTGGACTGCGTTTCCAGG
Band lengths:
147-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]