BtaEX6016946 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008926 | FUBP1
Description
Bos taurus far upstream element (FUSE) binding protein 1 (FUBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076846]
Coordinates
chr3:66972994-66974937:+
Coord C1 exon
chr3:66972994-66973065
Coord A exon
chr3:66973190-66973247
Coord C2 exon
chr3:66974916-66974937
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGTTTTTAATTGTAGATA
3' ss Score
9.36
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
TAATTGGCAGAGGAGGTGAACAGATCTCACGCATACAACAGGAATCTGGATGTAAAATACAGATAGCTCCTG
Seq A exon
ATAGTGGTGGCCTTCCAGAAAGGTCTTGTATGTTAACTGGAACACCCGAGTCTGTCCA
Seq C2 exon
ATCAGCAAAACGGTTACTGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008926-'5-10,'5-9,6-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.773 A=0.750 C2=0.875
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(38.1=100)
A:
PF0001324=KH_1=FE(30.2=100)
C2:
PF0001324=KH_1=PD(9.5=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGCAGAGGAGGTGAACAG
R:
GTCCAGTAACCGTTTTGCTG
Band lengths:
92-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]