MmuEX6074750 @ mm10
Exon Skipping
Gene
ENSMUSG00000028034 | Fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:MGI Symbol;Acc:MGI:1196294]
Coordinates
chr3:152217976-152219846:+
Coord C1 exon
chr3:152217976-152218047
Coord A exon
chr3:152218213-152218270
Coord C2 exon
chr3:152219684-152219846
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTATTTAATTGTAGATA
3' ss Score
8.76
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
TAATTGGCAGAGGAGGTGAACAGATCTCACGAATACAGCAGGAATCTGGATGCAAGATACAGATAGCACCTG
Seq A exon
ATAGTGGTGGCCTACCAGAAAGGTCTTGTATGCTAACTGGAACACCTGAATCTGTCCA
Seq C2 exon
ATCAGCAAAAAGATTATTGGACCAGATTGTTGAAAAGGGAAGACCAGCCCCTGGCTTTCATCATGGTGATGGACCTGGAAATGCAGTTCAGGAAATCATGATTCCAGCCAGCAAAGCAGGACTAGTTATTGGAAAGGGGGGCGAGACTATTAAACAACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028034-'17-18,'17-14,19-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.551 A=0.767 C2=0.564
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(38.1=100)
A:
PF0001324=KH_1=FE(30.2=100)
C2:
PF0001324=KH_1=PD(9.5=10.9),PF0001324=KH_1=PU(38.5=45.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCAGAGGAGGTGAACAGA
R:
CACCATGATGAAAGCCAGGGG
Band lengths:
137-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types