DreEX6026753 @ danRer10
Exon Skipping
Gene
ENSDARG00000077201 | myo7bb
Description
myosin VIIBb [Source:ZFIN;Acc:ZDB-GENE-070912-482]
Coordinates
chr2:23260901-23262371:-
Coord C1 exon
chr2:23262295-23262371
Coord A exon
chr2:23262059-23262178
Coord C2 exon
chr2:23260901-23261043
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCTGTCACTGTGCAGGTG
3' ss Score
11.33
5' ss Seq
AAGGTGCTC
5' ss Score
3.68
Exon sequences
Seq C1 exon
GCACTATAATGAATAACATGGACAGCTGTGATGTTCTGTCCTCCAGTCACTTCTCTGTAATTGCCAAGTTGTTGGAG
Seq A exon
GTGGATGATGCTGCTCTTGATAAGAGTCTGACCCATCGCTCCTTCATGACAAACAGAGAGATGGTCACTAAACCCCTCAGCTCAGAACAGGCCACAGACATCAGAGATGCCTTCGCCAAG
Seq C2 exon
GCTCTGTATGGAAGGTTGTTTGTTTGGATGTTCACAAAAATAAACAGCGCCATTCACAAACCCCAGACCGACGAGCCCTCTTACACACGCCAGTCTATTGGTCTGCTTGACATTTTTGGCTTTGAGAATTTCCCTCAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077201-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.6=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(6.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTATAATGAATAACATGGACAGC
R:
TGAGGGAAATTCTCAAAGCCA
Band lengths:
214-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]