DreEX6029055 @ danRer10
Exon Skipping
Gene
ENSDARG00000014674 | acsl3b
Description
acyl-CoA synthetase long-chain family member 3b [Source:ZFIN;Acc:ZDB-GENE-030131-492]
Coordinates
chr2:47647638-47650541:+
Coord C1 exon
chr2:47647638-47647788
Coord A exon
chr2:47649417-47649540
Coord C2 exon
chr2:47650470-47650541
Length
124 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTTATCGTCGCAGTGA
3' ss Score
7.95
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
TAATGGTGTCCCGCAGGCAGCCTGTCCCATCTGATATCGCAGTGATCATGTACACCAGCGGCTCTACAGGCATTCCTAAAGGAGTCATGATCTCTCACAGCAACATCATCGCGGGCATCACTGGCATGGCTGAACGCATCCCGAACCTTGA
Seq A exon
TGAGAATGACACCTATATTGGCTATCTGCCTCTCGCTCATGTCCTGGAGCTCAGCGCTGAGCTGGTGTGTGTGTCACACGGCTGTCGGATTGGATATTCATCACCTCAGACTCTTGCTGACCAG
Seq C2 exon
TCATCTAAAATTAAAAAGGGCAGTAAAGGAGACACCAGCGTCCTCAAACCAACACTGATGGCAGCTGTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014674-'14-16,'14-13,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.024 C2=0.208
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(10.5=100)
A:
PF0050123=AMP-binding=FE(8.6=100)
C2:
PF0050123=AMP-binding=FE(4.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCAGCCTGTCCCATCT
R:
AGGAACAGCTGCCATCAGTGT
Band lengths:
210-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]