MmuEX6025664 @ mm9
Exon Skipping
Gene
ENSMUSG00000032883 | Acsl3
Description
acyl-CoA synthetase long-chain family member 3 [Source:MGI Symbol;Acc:MGI:1921455]
Coordinates
chr1:78690771-78693075:+
Coord C1 exon
chr1:78690771-78690921
Coord A exon
chr1:78692656-78692779
Coord C2 exon
chr1:78693004-78693075
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTTACTCACCTTCCTTTCAGAGA
3' ss Score
10.49
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AAAAGAAAGCTCACAGCAAACCACTGCCCTCAGATATTGCAGTAATCATGTACACAAGTGGGTCCACAGGAATTCCAAAGGGAGTCATGATCTCACACAGCAACATCATTGCTTCTATAACGGGGATGGCGAGAAGGATTCCAAGACTGGG
Seq A exon
AGAGGAAGATGTGTATATTGGCTACTTGCCCCTGGCACATGTTCTAGAATTAAGTGCTGAGCTTGTGTGTCTTTCTCATGGATGCCGAATCGGCTACTCTTCACCACAGACATTAGCAGATCAG
Seq C2 exon
TCTTCAAAAATAAAAAAAGGAAGCAAAGGAGACACATCCGTGCTGAAGCCAACACTGATGGCAGCTGTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032883-'13-16,'13-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(10.5=100)
A:
PF0050123=AMP-binding=FE(8.6=100)
C2:
PF0050123=AMP-binding=FE(4.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCAAACCACTGCCCTC
R:
GGAACAGCTGCCATCAGTGTT
Band lengths:
211-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: