RnoEX6040538 @ rn6
Exon Skipping
Gene
ENSRNOG00000014718 | Acsl3
Description
acyl-CoA synthetase long-chain family member 3 [Source:RGD Symbol;Acc:70552]
Coordinates
chr9:84580641-84583133:+
Coord C1 exon
chr9:84580641-84580791
Coord A exon
chr9:84582730-84582853
Coord C2 exon
chr9:84583062-84583133
Length
124 bp
Sequences
Splice sites
3' ss Seq
CTTATCGGCCTTTCTTTCAGAGA
3' ss Score
9.18
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ACAAGAAAGCTCACAGCAAACCACTGCCCTCAGATATTGCAGTAATCATGTACACAAGTGGATCCACAGGAATTCCAAAGGGAGTCATGATCTCACACAGCAACATCATTGCCTCTATAACGGGGATGGCGAGAAGGATTCCAAGACTGGG
Seq A exon
AGAGGAAGATGTATACATTGGATATTTGCCCCTGGCACATGTTCTAGAATTAAGCGCTGAGCTTGTGTGTCTTTCTCATGGATGCCGGATTGGCTACTCTTCACCACAGACATTAGCAGATCAG
Seq C2 exon
TCTTCAAAAATAAAGAAAGGAAGCAAAGGAGACACATCCGTTCTGAAGCCCACGCTGATGGCGGCTGTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014718-'7-9,'7-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(10.5=100)
A:
PF0050123=AMP-binding=FE(8.6=100)
C2:
PF0050123=AMP-binding=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACAGCAAACCACTGCCC
R:
GTGGGCTTCAGAACGGATGTG
Band lengths:
195-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]