HsaEX6018820 @ hg19
Exon Skipping
Gene
ENSG00000123983 | ACSL3
Description
acyl-CoA synthetase long-chain family member 3 [Source:HGNC Symbol;Acc:3570]
Coordinates
chr2:223785998-223787867:+
Coord C1 exon
chr2:223785998-223786148
Coord A exon
chr2:223787426-223787549
Coord C2 exon
chr2:223787796-223787867
Length
124 bp
Sequences
Splice sites
3' ss Seq
ACGTCTCCCTTTTCTTTTAGAGA
3' ss Score
10.32
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AAAACCAACCTCATAGCAAACCATTGCCCTCAGATATTGCAGTAATCATGTACACAAGTGGATCCACAGGACTTCCAAAGGGAGTCATGATCTCACATAGTAACATTATTGCTGGTATAACTGGGATGGCAGAAAGGATTCCAGAACTAGG
Seq A exon
AGAGGAAGATGTCTACATTGGATATTTGCCTCTGGCCCATGTTCTAGAATTAAGTGCTGAGCTTGTCTGTCTTTCTCACGGATGCCGCATTGGTTACTCTTCACCACAGACTTTAGCAGATCAG
Seq C2 exon
TCTTCAAAAATTAAAAAAGGAAGCAAAGGGGATACATCCATGTTGAAACCAACACTGATGGCAGCAGTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123983-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=0.018 C2=0.250
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(10.5=100)
A:
PF0050123=AMP-binding=FE(21.6=100)
C2:
PF0050123=AMP-binding=FE(12.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAACCTCATAGCAAACCA
R:
GGAACTGCTGCCATCAGTGTT
Band lengths:
220-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)