MmuEX6025664 @ mm10
Exon Skipping
Gene
ENSMUSG00000032883 | Acsl3
Description
acyl-CoA synthetase long-chain family member 3 [Source:MGI Symbol;Acc:MGI:1921455]
Coordinates
chr1:78694196-78696500:+
Coord C1 exon
chr1:78694196-78694346
Coord A exon
chr1:78696081-78696204
Coord C2 exon
chr1:78696429-78696500
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTTACTCACCTTCCTTTCAGAGA
3' ss Score
10.49
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AAAAGAAAGCTCACAGCAAACCACTGCCCTCAGATATTGCAGTAATCATGTACACAAGTGGGTCCACAGGAATTCCAAAGGGAGTCATGATCTCACACAGCAACATCATTGCTTCTATAACGGGGATGGCGAGAAGGATTCCAAGACTGGG
Seq A exon
AGAGGAAGATGTGTATATTGGCTACTTGCCCCTGGCACATGTTCTAGAATTAAGTGCTGAGCTTGTGTGTCTTTCTCATGGATGCCGAATCGGCTACTCTTCACCACAGACATTAGCAGATCAG
Seq C2 exon
TCTTCAAAAATAAAAAAAGGAAGCAAAGGAGACACATCCGTGCTGAAGCCAACACTGATGGCAGCTGTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032883_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.006 C2=0.177
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(10.5=100)
A:
PF0050123=AMP-binding=FE(8.6=100)
C2:
PF0050123=AMP-binding=FE(4.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCAAACCACTGCCCTC
R:
GGAACAGCTGCCATCAGTGTT
Band lengths:
211-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types