GgaEX6045872 @ galGal4
Exon Skipping
Gene
ENSGALG00000005206 | ACSL3
Description
acyl-CoA synthetase long-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:3570]
Coordinates
chr9:7577808-7578941:+
Coord C1 exon
chr9:7577808-7577958
Coord A exon
chr9:7578509-7578632
Coord C2 exon
chr9:7578870-7578941
Length
124 bp
Sequences
Splice sites
3' ss Seq
CTCTTAAAAATTTGTTTCAGGGA
3' ss Score
8.18
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GAAACAAACAGCAAGCCAGGCCTGTACCCTCCGATATTGCAGTGATCATGTACACAAGTGGATCCACAGGAATTCCCAAAGGAGTCATGATCTCCCACTGCAACATAATTGCTGGTATAACTGGAATGGCTGAAAGAATTCCAAATCTGGG
Seq A exon
GGAAAAAGACATTTATATTGGCTATTTGCCTCTTGCCCACGTTCTGGAGCTGAGTGCTGAACTTGTGTGCCTGTCTCATGGATGCCGCATTGGTTACTCTTCGCCTCAGACATTAGCTGACCAG
Seq C2 exon
TCCTCTAAAATCAAGAAAGGAAGCAAAGGTGATGTTACTACACTTAAACCAACCCTAATGGCAGCTGTCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005206-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(10.5=100)
A:
PF0050123=AMP-binding=FE(8.6=100)
C2:
PF0050123=AMP-binding=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACAAACAGCAAGCCAGGC
R:
CAGCTGCCATTAGGGTTGGTT
Band lengths:
218-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]