DreEX6029210 @ danRer10
Exon Skipping
Gene
ENSDARG00000052997 | sema4e
Description
semaphorin 4e [Source:ZFIN;Acc:ZDB-GENE-990715-7]
Coordinates
chr2:49849940-49852996:+
Coord C1 exon
chr2:49849940-49850002
Coord A exon
chr2:49852707-49852805
Coord C2 exon
chr2:49852897-49852996
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTTTTTGTCTTCTTCTTTAGAAT
3' ss Score
10.81
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TTGAAATGGGAAGTAACACGTGACCAGCAAAACGACTGTTCAAATAAGGGGAAAGATGCTACG
Seq A exon
AATGACTGCAAAAACTATATTCGAATTCTTCATAAAAAGGACGACGGCAGAATGTATGTCTGTGGAACCAAAGCGTTCAACCCCACCTGTGGCTATTTG
Seq C2 exon
TCCTATGCGGATGGTAAGCTGACTTTAGAGATCCTCCAAGAAGATACGAAAGGGAAATGTCCGTTCGACCCTTTTCAGCGATATACATCTGCAATGGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052997-'6-11,'6-10,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(35.1=100)
A:
PF0140314=Sema=FE(7.0=100)
C2:
PF0140314=Sema=FE(7.2=100)
Main Skipping Isoform:
ENSDART00000056252fB5459
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGGAAGTAACACGTGACCA
R:
CGACCATTGCAGATGTATATCGC
Band lengths:
159-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]