DreEX6030705 @ danRer10
Exon Skipping
Gene
ENSDARG00000009026 | CR388002.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F4G7]
Coordinates
chr1:13432645-13438437:+
Coord C1 exon
chr1:13432645-13432680
Coord A exon
chr1:13433709-13433933
Coord C2 exon
chr1:13438339-13438437
Length
225 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTCTACATAAACAGCTT
3' ss Score
6.16
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
CCAGTCTACCCCATGCCTTGACCATGACAACAGCAG
Seq A exon
CTTCCTGGTCAGTTTTATGGTGGATGCTCGTGGTGGAGCCATGCGTGGCTGTCGTCACAATGGACTACGCATTATTGTTCCACCTAGAAAGTGTTCAGCTCCTACACGAGTCACGTGTCGCCTGGTGAAGAGGCACAGACTGGCCTCTATGCCCCCAATGGTGGAAGGAGAGGGGCTTGCTGGCAAAATCATTGAAGTTGGTCCCACCGGAGCACAGTTTCTTGG
Seq C2 exon
TAAACTGCACCTCCCAACAGCCCCTCCTCCTCTAAATGAGGGTGAAAGTCTTGTCAGCAGAATTCTGCAGTTGGGTCCACCCGGCACCAAATTCCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009026-'38-34,'38-33,39-34=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.079 C2=0.353
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(1.2=7.7)
A:
PF0079115=ZU5=FE(89.3=100),PF0079115=ZU5=PU(0.1=0.0)
C2:
PF0079115=ZU5=PD(8.3=20.6),PF0079115=ZU5=PU(53.2=97.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTCTACCCCATGCCTTGA
R:
GAGGAATTTGGTGCCGGGTG
Band lengths:
133-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]