DreEX6033258 @ danRer10
Exon Skipping
Gene
ENSDARG00000018721 | npnt
Description
nephronectin [Source:ZFIN;Acc:ZDB-GENE-090312-201]
Coordinates
chr1:49540632-49544180:+
Coord C1 exon
chr1:49540632-49540730
Coord A exon
chr1:49541379-49541638
Coord C2 exon
chr1:49543647-49544180
Length
260 bp
Sequences
Splice sites
3' ss Seq
AATTCTGATGTCAACGGCAGGTG
3' ss Score
6.24
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
AGTCTGGCTATCTGAGCTGCTCATTTGATCACGGTTTGTGTGGATGGATCCAGCGCAGAGAGGGAGACCTTCATTGGGAGACATCGGAAGATCCTTCGG
Seq A exon
GTGGGAGGTACCTAACCATCTCTGAGGGCGGGGAGAAGCGTGGTGGGCGTGGTGCTCAGCTGATCCTCCCCCTGAAAACCCCCTGGAACGAGGGGAACCTGTGCTTGGCCTTCAGACACAACATGGCAGGTCACCATGTGGGAATGCTGCAGGTGTTCGTACAGAAAGGTCGGCAGCACAGTCCCGCTGTCTGGGGACGAACAGGAGGAAACGGCTGGAGGTCCACACAGATCACCCTTTGGGGCAATGGGCTAGAAAGT
Seq C2 exon
GTGATCGTGAAGGGCGAGCGGCGGAGAGGCCGCAAGGGCGAAATTGCTCTGGATGACATGAGTCTCAAACGAGGTTCCTGTCAGGAAGAGCACAATCTGAGGAGACTTTAACAACGGTAACAGCATCAATAGAGACTTTTATTGCCAGCTTTACTCACAGGATTCGAGAAAGATGGACACCTTATGGAAAGGGACGTGGCCTTCTGTCAGTCCCGATATGGTAATGGTGCACTTTCTCAGCGGCTGCAAGTGCATGTCCCAGCTCAACAGAGTGCGGTAGGATGACGTATTTTTGTAGAACAAACAGGGAAAGTATTTTAGTACTTCAGATTGTATCGTCTCTAAGTCAGTATTGTAGTTTTTTCAATGGGTTGAAGTTGATCAGTATTTTTCATAAGGAATTGGTTGCTAAAACTAATTATGTAACTAAACAAGTTTGATCATTTACTTAATAGGTGCTTTCATAGCTGTATTGTTTATGACTGGGCTTTTGCAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018721-'16-12,'16-11,17-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.206 A=0.253 C2=0.175
Domain overlap (PFAM):
C1:
PF0062918=MAM=PU(18.9=79.4)
A:
PF0062918=MAM=FE(60.1=100)
C2:
PF0062918=MAM=PD(19.6=75.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCTCATTTGATCACGGT
R:
TATCGGGACTGACAGAAGGCC
Band lengths:
303-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]