MmuEX6074169 @ mm10
Exon Skipping
Gene
ENSMUSG00000040998 | Npnt
Description
nephronectin [Source:MGI Symbol;Acc:MGI:2148811]
Coordinates
chr3:132881745-132890862:-
Coord C1 exon
chr3:132890764-132890862
Coord A exon
chr3:132885756-132886012
Coord C2 exon
chr3:132881745-132884513
Length
257 bp
Sequences
Splice sites
3' ss Seq
GCCCTGCTTTGCCATTGCAGGTG
3' ss Score
10.59
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTATTCTCATACACAGCTGCAATTTTGACCATGGACTCTGTGGATGGATCAGAGAAAAAGATAGTGACTTGCACTGGGAGACAGCCAGGGACCCAGCAG
Seq A exon
GTGGACAGTATCTCACAGTGTCTGCAGCCAAAGCCCCGGGGGGAAAAGCCGCTCGCTTGGTGTTACGTCTCGGCCACCTCATGCATTCAGGGGACCTGTGCCTGTCCTTTAGGCACAAGGTGACTGGGCTGCACTCGGGCACACTGCAGGTGTTTGTGAGGAAACACGGTACCCACGGAGCAGCCCTGTGGGGAAGAAATGGTGGCCATGGCTGGAGGCAAACCCAGATCACCTTGCGAGGGGCTGACGTCAAAAGC
Seq C2 exon
GTCATCTTCAAAGGTGAAAAAAGGCGTGGTCACACGGGGGAGATTGGATTGGATGATGTGAGCTTGAAAAGAGGTCGCTGCTGAGAAGACCCCTGGCAGCTCCCGAGCTAGCAGTGAATTTGTCGCTCTCCCTCATTTCCCAATGCTTGCCCTCTTGTCTCCCTCTTATCAGGCCTAGGGCAGGAGTGGGTCAGGAGGAAGGTTGCTTGGTGACTCGGGTCTCGGTGGCCTGTTTTGGTGCAATCCCAGTGAACAGTGACACTCTCGAAGTACAGGAGCATCTGGAGACACCTCCGGGCCCTTCTGGGGTGTTACCTTATATGGTGTCTTCTTTAGGAAGGCCTTTGGCATGTGTGACCGGGACCATCCTTCATCCTGGTTATAGAGTGGGCCTGCTAGCCAACTACGGGAGACGTTTTCATTCTGTGCAAATGGTATTCTGTGATCTGTCCAGTGTTGTACCATGAGTAGTACTGACTTTGCTTACAGTATGACAGTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040998-'32-24,'32-22,35-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.210 A=0.108 C2=0.148
Domain overlap (PFAM):
C1:
PF0062918=MAM=PU(19.3=79.4)
A:
PF0062918=MAM=FE(60.7=100)
C2:
PF0062918=MAM=PD(18.6=92.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGGACTCTGTGGATGGA
R:
GACCCGAGTCACCAAGCAAC
Band lengths:
293-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types