HsaEX0043603 @ hg38
Exon Skipping
Gene
ENSG00000168743 | NPNT
Description
nephronectin [Source:HGNC Symbol;Acc:HGNC:27405]
Coordinates
chr4:105959028-105971674:+
Coord C1 exon
chr4:105959028-105959126
Coord A exon
chr4:105967188-105967444
Coord C2 exon
chr4:105968895-105971674
Length
257 bp
Sequences
Splice sites
3' ss Seq
CCCTGCTTTTCCCATTCCAGGTG
3' ss Score
12.57
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTGTTCTGGTACACAGTTGTAATTTTGACCATGGACTTTGTGGATGGATCAGGGAGAAAGACAATGACTTGCACTGGGAACCAATCAGGGACCCAGCAG
Seq A exon
GTGGACAATATCTGACAGTGTCGGCAGCCAAAGCCCCAGGGGGAAAAGCTGCACGCTTGGTGCTACCTCTCGGCCGCCTCATGCATTCAGGGGACCTGTGCCTGTCATTCAGGCACAAGGTGACGGGGCTGCACTCTGGCACACTCCAGGTGTTTGTGAGAAAACACGGTGCCCACGGAGCAGCCCTGTGGGGAAGAAATGGTGGCCATGGCTGGAGGCAAACACAGATCACCTTGCGAGGGGCTGACATCAAGAGC
Seq C2 exon
GTCGTCTTCAAAGGTGAAAAAAGGCGTGGTCACACTGGGGAGATTGGATTAGATGATGTGAGCTTGAAAAAAGGCCACTGCTCTGAAGAACGCTAACAACTCCAGAACTAACAATGAACTCCTATGTTGCTCTATCCTCTTTTTCCAATTCTCATCTTCTCTCCTCTTCTCCCTTTTATCAGGCCTAGGAGAAGAGTGGGTCAGTGGGTCAGAAGGAAGTCTATTTGGTGACCCAGGTTTTTCTGGCCTGCTTTTGTGCAATCCCAATGAACAGTGATACCCTCCTTGAAATACAGGGGCATCGCAGACACATCAAAGCCATCTGTGGGTGTTGCCTTCCATCCTGTGTCTCTTTCAGGAAGGCATTCAGCATGCGTGAGCCATACCATCCTCCATCCTGATTACAAGGTGCTCCTTGTAGCAAATTATGAGAGTGAGTTACGGGAGCAGTTTTTAAAAGAAATCTTTGCAGATGGCTATGATGTTATGTGTTCGGTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168743_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=0.093 C2=0.184
Domain overlap (PFAM):
C1:
PF0062918=MAM=PU(23.5=79.4)
A:
PF0062918=MAM=FE(73.9=100)
C2:
PF0062918=MAM=PD(19.7=87.5)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATGACTTGCACTGGGAACC
R:
GATTGCACAAAAGCAGGCCAG
Band lengths:
302-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development