GgaEX6034437 @ galGal4
Exon Skipping
Gene
ENSGALG00000010566 | NPNT
Description
nephronectin [Source:HGNC Symbol;Acc:HGNC:27405]
Coordinates
chr4:37998529-38006421:-
Coord C1 exon
chr4:38006323-38006421
Coord A exon
chr4:38002812-38003068
Coord C2 exon
chr4:37998529-38000635
Length
257 bp
Sequences
Splice sites
3' ss Seq
AATTGCTTTTTGTTTTTCAGGGG
3' ss Score
10.61
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GCACGCTGGTACACAGCTGTAATTTTGACAGCGGCCTGTGTGGATGGATCAAGGACAAGGATGATGGTTTGCACTGGGAGCCAGTTAGAGACGTGTCAG
Seq A exon
GGGGACGATATCTCACCATCTCTGAACCCAAAGGCACAGAGGGAAAAGCAGCACATCTTATTCTGCCGCTGGGCCACGTGGCTCAGGCTGGGGACTTGTGCCTGTCATTCAGACATAAGGTGCCTGGGCTGCATTCGGGCGCCCTCCAAGTCTTTGTGAGGAGAAGTGGTGCTCATGGACCAGCTGTGTGGGGAAGGAACGGTGGCCACGGCTGGAGGCAGACACACATAACTCTGCGAGGACTGGGCATCAAGAGT
Seq C2 exon
GTTATTTTCAAAGGAGAAAAAGGGGAAGGAAGAACTGGAGACATTGGACTGGATGATGTGATGTTGAGAAGAGGACGCTGCTCTGAAGAGCATTAGCAGCAAAGACAGTGGAGTAGCACAGCCAACTCCTCCAGCCCTTCTCATGCTATTCTTACCGAGCTTTGAAACAGAACTGCATGAAAAAGGAAAAACAGATGGAGAATGACAATTTCTTAATGGTCTGCTAAGTGCAATCTCGCTGAAACTTCAATTAAAAATATGAAGAGCTCCTCCTGGAATTCAGGAACTCAAAAATCAGTGCTGGTTGTTTCTATTAATCCTTGCCTCTAAATCATGTTTTGTATGTAGTAACTTTATCCCCTATTAAACCCGAGTACTCAGCCAAAGAGCACTTGTGAAAAAGGGATAATTAATTACAAGCAGTATGAAATCTCTGGCTCGGAAAGTCTTAGTATTAACAGATATTCATTATTTTCCCATAGTACTACTCTTCTATTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010566-'30-25,'30-24,32-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=0.105 C2=0.129
Domain overlap (PFAM):
C1:
PF0062918=MAM=PU(19.0=79.4)
A:
PF0062918=MAM=FE(59.9=100)
C2:
PF0062918=MAM=PD(19.7=87.5)
Main Skipping Isoform:
ENSGALT00000017193fB10018
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGAGCCAGTTAGAGACGT
R:
TGAATTCCAGGAGGAGCTCTTCA
Band lengths:
308-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]